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  "Title": "Microbial Niche Measurements",
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  "Date": "2020-01-19",
  "Authors@R": "person(\"Damien\",\n\"Finn\",\nrole = c(\"aut\", \"cre\"),\nemail = \"damien.finn@uqconnect.edu.au\")",
  "Maintainer": "Damien Finn <damien.finn@uqconnect.edu.au>",
  "Description": "Measures niche breadth and overlap of microbial taxa from\nlarge matrices. Niche breadth measurements include Levins'\nniche breadth (Bn) index, Hurlbert's Bn and Feinsinger's\nproportional similarity (PS) index. (Feinsinger, P., Spears,\nE.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap\nmeasurements include Levin's Overlap (Ludwig, J.A. and\nReynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard\nsimilarity index of Feinsinger's PS values between taxa pairs,\nas Proportional Overlap.",
  "License": "GPL-2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 05:51:43 UTC",
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  "Author": "Damien Finn [aut, cre]",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://damienfinn.r-universe.dev",
  "Date/Publication": "2020-01-30 08:40:10 UTC",
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      "page": "MicroNiche-package",
      "title": "Microbial Niche Measurements",
      "topics": [
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        "MicroNiche"
      ]
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      "title": "Data frame for package MicroNiche",
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      "title": "Feinsinger's proportional similarity index",
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