Package: MicroNiche 1.0.0

MicroNiche: Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Authors:Damien Finn [aut, cre]

MicroNiche_1.0.0.tar.gz
MicroNiche_1.0.0.zip(r-4.7-any)MicroNiche_1.0.0.zip(r-4.6-any)MicroNiche_1.0.0.zip(r-4.5-any)
MicroNiche_1.0.0.tgz(r-4.6-any)MicroNiche_1.0.0.tgz(r-4.5-any)
MicroNiche_1.0.0.tar.gz(r-4.7-any)MicroNiche_1.0.0.tar.gz(r-4.6-any)
MicroNiche_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MicroNiche/json (API)

# Install 'MicroNiche' in R:
install.packages('MicroNiche', repos = c('https://damienfinn.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • df - Data frame for package MicroNiche

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 3 stars 293 downloads 5 exports 23 dependencies

Last updated from:0443637d08. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK121
source / vignettesOK190
linux-releaseOK146
macos-releaseOK171
macos-oldrelOK137
windows-develOK79
windows-releaseOK75
windows-oldrelOK78
wasm-releaseOK106

Exports:feinsingers.PShurlberts.Bnlevins.Bnlevins.overlapproportional.overlap

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr