Package: MicroNiche 1.0.0

MicroNiche: Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Authors:Damien Finn [aut, cre]

MicroNiche_1.0.0.tar.gz
MicroNiche_1.0.0.zip(r-4.7)MicroNiche_1.0.0.zip(r-4.6)MicroNiche_1.0.0.zip(r-4.5)
MicroNiche_1.0.0.tgz(r-4.6-any)MicroNiche_1.0.0.tgz(r-4.5-any)
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MicroNiche_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MicroNiche/json (API)

# Install 'MicroNiche' in R:
install.packages('MicroNiche', repos = c('https://damienfinn.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • df - Data frame for package MicroNiche

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 3 stars 9 scripts 238 downloads 5 exports 23 dependencies

Last updated from:0443637d08. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK136
source / vignettesOK167
linux-release-x86_64OK179
macos-release-arm64OK100
macos-oldrel-arm64OK101
windows-develOK87
windows-releaseOK92
windows-oldrelOK100
wasm-releaseOK172

Exports:feinsingers.PShurlberts.Bnlevins.Bnlevins.overlapproportional.overlap

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr