Package: MicroNiche 1.0.0

MicroNiche: Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Authors:Damien Finn [aut, cre]

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MicroNiche/json (API)

# Install 'MicroNiche' in R:
install.packages('MicroNiche', repos = c('https://damienfinn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • df - Data frame for package MicroNiche

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 3 stars 5 scripts 149 downloads 5 exports 33 dependencies

Last updated 5 years agofrom:0443637d08. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-winOKNov 15 2024
R-4.5-linuxOKNov 15 2024
R-4.4-winOKNov 15 2024
R-4.4-macOKNov 15 2024
R-4.3-winOKNov 15 2024
R-4.3-macOKNov 15 2024

Exports:feinsingers.PShurlberts.Bnlevins.Bnlevins.overlapproportional.overlap

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr