Package: MicroNiche 1.0.0

MicroNiche: Microbial Niche Measurements

Measures niche breadth and overlap of microbial taxa from large matrices. Niche breadth measurements include Levins' niche breadth (Bn) index, Hurlbert's Bn and Feinsinger's proportional similarity (PS) index. (Feinsinger, P., Spears, E.E., Poole, R.W. (1981) <doi:10.2307/1936664>). Niche overlap measurements include Levin's Overlap (Ludwig, J.A. and Reynolds, J.F. (1988, ISBN:0471832359)) and a Jaccard similarity index of Feinsinger's PS values between taxa pairs, as Proportional Overlap.

Authors:Damien Finn [aut, cre]

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MicroNiche.pdf |MicroNiche.html✨
MicroNiche/json (API)

# Install 'MicroNiche' in R:
install.packages('MicroNiche', repos = c('https://damienfinn.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • df - Data frame for package MicroNiche

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 3 stars 5 scripts 144 downloads 5 exports 33 dependencies

Last updated 5 years agofrom:0443637d08. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 15 2025
R-4.5-winOKMar 15 2025
R-4.5-macOKMar 15 2025
R-4.5-linuxOKMar 15 2025
R-4.4-winOKMar 15 2025
R-4.4-macOKMar 15 2025
R-4.4-linuxOKMar 15 2025
R-4.3-winOKMar 15 2025
R-4.3-macOKMar 15 2025

Exports:feinsingers.PShurlberts.Bnlevins.Bnlevins.overlapproportional.overlap

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr